When you build out the BES server, you need to install the Exchange system managment tools prior to installing the BlackBerry server software. Then, as you patch your exchange servers, apply the same patches to the BES, this will update the exchange system manager, CDO, MAPI etc all at the same version.
You'll want to double check this, but last I read you couldn't install Exchange SP2 on the BES, but that may have changed with the 4.1 BES software.
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